After Effects

Start by opening up your Export settings by going into File -> Export -> Add to Render Queue

Ensure you don't have any leftover render queues by selecting everything but the lasts and pressing DEL to remove them

To make a new template, click on the Down arrow right next to Output Module: and select Make Template...

Give it a settings name and click Edit

Lossless Exporting with Voukoder

While writing this I just realized the only video format After Effectrs let you export is lossless uncompressed AVI, look up tutorials on how to use Adobe Media Encoder I guess..

Select Voukoder in the Format dropdown and configure it

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After having configured Output Module Settings, click Ok to close, and Ok again on the Output Module Templates to save your new template.